head 1.4; access; symbols; locks; strict; comment @# @; 1.3 date 2003.05.06.15.41.09; author pankaj; state Exp; branches; next 1.2; 1.2 date 2002.02.28.17.22.46; author pankaj; state Exp; branches; next 1.1; 1.1 date 2002.02.21.16.37.35; author pankaj; state Exp; branches; next ; desc @@ 1.3 log @ corrected the spellings for "endosperm" many TO terms with genetic and or epigenetic terms became obsolete added the traits.zip file with an updated archive @ text @!autogenerated-by: DAG-Edit version 1.306-beta-1 !saved-by: pj37 !date: Fri Jun 26 16:03:25 EDT 2003 !version: $Revision: 1.1.1.1 $ !editor: Pankaj Jaiswal (Gramene) !Title: Plant Trait Ontology $trait ontology ; TO:0000387 ; synonym:TO %biochemical trait ; TO:0000277 %biological process related trait ; TO:0000283 %physiological process related trait ; TO:0000349 %cell membrane stability ; TO:0000467 ; synonym:CELMBSTB %leaf water potential ; TO:0000131 ; synonym:LFWP ; synonym:lwp % abiotic stress related trait ; TO:0000168 %relative water content ; TO:0000136 ; synonym:RELWCN ; synonym:leaf relative water content ; synonym:rec %nitrogen recycling ; TO:0000506 ; synonym:NIRCYC %osmotic adjustment capacity ; TO:0000507 ; synonym:OSADJCAP %phosphorous uptake ; TO:0000511 ; synonym:PHOUP %photosynthetic ability ; TO:0000316 ; synonym:PHOTOSYNAB %potassium uptake ; TO:0000514 ; synonym:KUP %sodium uptake ; TO:0000527 ; synonym:NAUP %stomatal closure rate ; TO:0000520 ; synonym:STOCSRRATE %stomatal closure time ; TO:0000521 ; synonym:STOCSRTM %stomatal conductance ; TO:0000522 ; synonym:STOCOND %stomatal resistance ; TO:0000523 ; synonym:STORS %enzymatic activity/protein content related trait ; TO:0000282 %enzyme activity ; TO:0000599 %ADP glucose pyrophosphorylase activity ; TO:0000284 ; synonym:ADP-glucose pyrophosphorylase ; synonym:ADP-glucose synthase ; synonym:ADP-glucose synthetase ; synonym:ADPG pyrophosphorylase ; synonym:AGPACT ; synonym:adenosine diphosphate glucose pyrophosphorylase ; synonym:adenosine diphosphoglucose pyrophosphorylase ; synonym:glucose 1-phosphate adenylyltransferase ; synonym:glucose-1-phosphate adenylyltransferase activity %invertase activity ; TO:0000311 ; synonym:INVACT ; synonym:acid invertase ; synonym:alkaline invertase ; synonym:beta-D-fructofuranoside fructohydrolase ; synonym:beta-fructofuranosidase activity ; synonym:beta-fructosidase ; synonym:beta-h-fructosidase ; synonym:fructosylinvertase ; synonym:glucosucrase ; synonym:invertin ; synonym:maxinvert L 1000 ; synonym:saccharase ; synonym:sucrase %sucrose phosphate synthase activity ; TO:0000331 ; synonym:SPS ; synonym:SPSACT ; synonym:UDP-glucose-fructose-phosphate glucosyltransferase ; synonym:sucrose 6-phosphate synthase ; synonym:sucrose phosphate synthetase ; synonym:sucrose phosphate-uridine diphosphate glucosyltransferase ; synonym:sucrose-phosphate synthase activity ; synonym:sucrosephosphate-UDP glucosyltransferase ; synonym:uridine diphosphoglucose-fructose phosphate glucosyltransferase %total amylase activity ; TO:0000336 ; synonym:TAMYASEACT ; synonym:amylase activity %alpha-amylase activity ; TO:0000288 ; synonym:ALPHAAMYASEACT ; synonym:Amy ; synonym:alpha amylase ; synonym:endoamylase ; synonym:glycogenase ; synonym:taka-amylase A %beta-amylase activity ; TO:0000338 ; synonym:BETAAMYASEACT %protein content ; TO:0000598 ; synonym:PROTCN ; synonym:total protein content %glutamine synthetase content ; TO:0000305 ; synonym:GS1 ; synonym:GS1CN ; synonym:L-glutamine synthetase ; synonym:glutamate-ammonia ligase ; synonym:glutamylhydroxamic synthetase %NADH glutamate synthase content ; TO:0000312 ; synonym:L-glutamate synthase (NADH) ; synonym:L-glutamate synthetase ; synonym:NADH-dependent glutamate synthase ; synonym:NADH-glutamate synthase ; synonym:NADHGOGATCN ; synonym:glutamate (reduced nicotinamide adenine dinucleotide) synthase ; synonym:glutamate synthase (NADH) activity ; synonym:glutamate synthase (NADH2) %perodidase-71 content ; TO:0000313 ; synonym:P71CN %phosphoglycerate mutase content ; TO:0000314 ; synonym:PGAM ; synonym:PGAMCN %rubisco content ; TO:0000319 ; synonym:RUBISCOCN %rubisco to chlorophyll ratio ; TO:0000320 ; synonym:RUBISCOCHLRO % chlorophyll ratio ; TO:0000298 %rubisco to nitrogen content ratio ; TO:0000321 ; synonym:RUBISCONICNRO %rubisco to soluble protein ratio ; TO:0000324 ; synonym:RUBISCOSPROTRO %soluble protein content ; TO:0000325 ; synonym:SPROTCN %metabolite content related trait ; TO:0000281 %carbohydrate content ; TO:0000291 ; synonym:CARBCN %amylopectin content ; TO:0000097 ; synonym:AMYPCTCN % carbohydrate composition related trait ; TO:0000489 %amylose to amylopectin ratio ; TO:0000372 ; synonym:AMYAMYPCTRO % amylose content ; TO:0000196 %amylose content ; TO:0000196 ; synonym:AMYCN ; synonym:Amy % carbohydrate composition related trait ; TO:0000489 %amylose to amylopectin ratio ; TO:0000372 ; synonym:AMYAMYPCTRO % amylopectin content ; TO:0000097 %glucosamine content ; TO:0000297 ; synonym:2-amino-2-deoxyglucopyranose content ; synonym:GLUCNCN %glucose content ; TO:0000300 ; synonym:D-glucose content ; synonym:GLUCCN ; synonym:dextrose content %hexose content ; TO:0000307 ; synonym:HEXCN %reducing sugar content ; TO:0000318 ; synonym:REDSUGCN %sucrose content ; TO:0000328 ; synonym:SUCROSECN ; synonym:saccharose content %sugar content ; TO:0000333 ; synonym:SUGARCN %total soluble sugar content ; TO:0000340 ; synonym:TSOLSUGARCN %flavonoid content ; TO:0000290 %anthocyanin content ; TO:0000071 ; synonym:ANTHCN % pigment content ; TO:0000494 %carotenoid content ; TO:0000496 ; synonym:CRTCN % pigment content ; TO:0000494 %carotene content ; TO:0000289 %xanthophyll content ; TO:0000301 ; synonym:XANCN %chlorophyll content ; TO:0000495 ; synonym:CHLCN %chlorophyll ratio ; TO:0000298 ; synonym:CHLRO ; synonym:chl-a to chl-b ratio ; synonym:chlorophyll content ratio %rubisco to chlorophyll ratio ; TO:0000320 ; synonym:RUBISCOCHLRO % rubisco content ; TO:0000319 %chlorophyll-a content ; TO:0000293 ; synonym:chl-a %chlorophyll-b content ; TO:0000295 %growth hormone content ; TO:0000476 %abscisic acid concentration ; TO:0000478 ; synonym:ABA concentration ; synonym:ABACONC ; synonym:abscisic acid accumulation ; synonym:abscisic acid content %mineral or ion content related trait ; TO:0000465 %carbon content ; TO:0000466 ; synonym:CBCN %potassium concentration ; TO:0000513 ; synonym:KCONC %sodium concentration ; TO:0000526 ; synonym:NACONC %sodium to potassium ratio ; TO:0000525 ; synonym:NAKRO ; synonym:Na/K ratio ; synonym:sodium to potassium content ratio %fertility or sterility trait ; TO:0000392 % floret related trait ; TO:0000274 % flower related trait ; TO:0000499 %fertility related trait ; TO:0000420 %fertility restoration trait ; TO:0000497 ; synonym:RF %female fertility restoration trait ; TO:0000498 ; synonym:FEMRF % pistil related trait ; TO:0000223 %male fertility restoration trait ; TO:0000308 ; synonym:MALERF ; synonym:fertility restoration in F1 hybrids ; synonym:fertility restoration trait % stamen related trait ; TO:0000215 % yield related trait ; TO:0000371 %pollen fertility ; TO:0000421 ; synonym:POFRT %incompatibility trait ; TO:0000035 %hybrid incompatibility ; TO:0000036 ; synonym:HYBIC % yield related trait ; TO:0000371 %f1-hybrid incompatibility ; TO:0000042 ; synonym:F1HYBIC %f2-generation sterility ; TO:0000046 ; synonym:F2GST %self-incompatibility ; TO:0000310 ; synonym:Genetic self-incompatibility %gametophytic incompatibility ; TO:0000049 ; synonym:GPHIC %sporophytic incompatibility ; TO:0000047 %sterility related trait ; TO:0000485 %female sterility ; TO:0000358 ; synonym:FEMST % pistil related trait ; TO:0000223 %embryosac abortion ; TO:0000416 ; synonym:EBSABR %male sterility ; TO:0000437 ; synonym:degree of male sterility of male sterile lines ; synonym:male sterility measure % stamen related trait ; TO:0000215 %male sterility type ; TO:0000106 ; synonym:MS %cytoplasmic male sterility ; TO:0000580 %cytoplasmic male sterility (sensu Oryza) ; TO:0000232 ; synonym:CMS %chinsurah boro CMS ; TO:0000169 ; synonym:BOROCMS ; synonym:CMS-boro % aborted tri-nucleate stage ; TO:0000026 %cms-hl type ; TO:0000350 ; synonym:CMS-HL ; synonym:HLCMS % aborted bi-nucleate stage ; TO:0000415 %wild abortive CMS ; TO:0000110 ; synonym:CMS-WA ; synonym:WACMS % aborted uni-nucleate stage ; TO:0000060 %genetically engineered male sterility ; TO:0000111 %reversible male sterility ; TO:0000004 ; synonym:RMS %genic male sterility ; TO:0000199 ; synonym:GMS %genic-photoperiod sensitive ; TO:0000009 ; synonym:PGMS %genic-thermo sensitive ; TO:0000067 ; synonym:TGMS %genic-thermo-photoperiod sensitive ; TO:0000217 ; synonym:TPGMS %nuclear mediated male sterility ; TO:0000389 ; scale:6 %pollen abortion type ; TO:0000218 ; synonym:abortion pattern ; synonym:abortion pattern of male sterile lines %aborted at pollen maturity stage ; TO:0000353 ; synonym:PMTABR %aborted bi-nucleate stage ; TO:0000415 ; synonym:BNUABR %cms-hl type ; TO:0000350 ; synonym:CMS-HL ; synonym:HLCMS % cytoplasmic male sterility (sensu Oryza) ; TO:0000232 %aborted tri-nucleate stage ; TO:0000026 ; synonym:TNUABR %chinsurah boro CMS ; TO:0000169 ; synonym:BOROCMS ; synonym:CMS-boro % cytoplasmic male sterility (sensu Oryza) ; TO:0000232 %aborted uni-nucleate stage ; TO:0000060 ; synonym:UNUABR %wild abortive CMS ; TO:0000110 ; synonym:CMS-WA ; synonym:WACMS % cytoplasmic male sterility (sensu Oryza) ; TO:0000232 %pollen free ; TO:0000245 %pollen sterility ; TO:0000053 %spikelet sterility (sensu Poaceae) ; TO:0000436 ; synonym:SPKST %obsolete ; TO:0000005 %environmental stress related trait ; TO:0000186 %epigenetic trait ; TO:0000002 %genetic trait ; TO:0000256 %plant genetic trait ; TO:0000341 %grassy stunt virus disease ; TO:0000216 %hoppers ; TO:0000407 %planthopper ; TO:0000380 %leafhopper ; TO:0000091 %hybrid evaluation ; TO:0000334 ; synonym:parental line evaluation %inflorescence feature ; TO:0000076 %inflorescence type ; TO:0000500 %male sterility extent ; TO:0000037 ; synonym:degree of male sterility of male sterile lines ; synonym:male sterility measure %maturity trait ; TO:0000174 %phenotypic acceptability ; TO:0000322 ; synonym:PAcp %plant genetic trait unknown ; TO:0000239 %plant survivability ; TO:0000272 %rot disease ; TO:0000362 %smut disease ; TO:0000302 %spot disease ; TO:0000066 %stem morphology ; TO:0000219 ; synonym:culm morphology %total biomass yield ; TO:0000457 ; synonym:TBIOMYLD %unassigned ; TO:0000183 %whole plant related trait ; TO:0000398 %yield and yield component ; TO:0000393 %yield component ; TO:0000039 %plant anatomy and morphology related trait ; TO:0000017 %inflorescence related trait ; TO:0000373 ; synonym:panicle related trait