/**
 * 
 */
package ie.dcu.apps.ist.labelling;

import java.util.ArrayList;
import java.util.regex.Matcher;
import java.util.regex.Pattern;

import org.apache.commons.lang3.StringEscapeUtils;

/**
 * @author preecej
 * Contains attributes associated with terms received from ontologies.
 */
public class OntologyTerm {

	private String accessionId;
	private String name;
	private String aspect;
	private String definition;
	private String comment;
	private ArrayList<String> synonyms;

	public String getAccessionId() {
		return this.accessionId;
	}
	public String getName() {
		return this.name;
	}
	public String getAspect() {
		return this.aspect;
	}
	public String getDefinition() {
		return this.definition;
	}
	public String getComment() {
		return this.comment;
	}
	public ArrayList<String> getSynonyms() {
		return this.synonyms;
	}
	// returns an HTML-safe label formatted to include both name and accession id
	public String getFormattedTerm() {
		return StringEscapeUtils.unescapeHtml4(this.name) + " {" + this.accessionId + "}";
	}

	public void setAccessionId(String accessionId) {
		this.accessionId = accessionId;
	}
	public void setName(String name) {
		this.name = name;
	}
	public void setAspect(String aspect) {
		this.aspect = aspect;
	}
	public void setDefinition(String definition) {
		this.definition = definition;
	}
	public void setComment(String comment) {
		this.comment = comment;
	}
	public void setSynonyms(ArrayList<String> synonyms) {
		this.synonyms = synonyms;
	}

	// constructor
	public OntologyTerm() {
		this.synonyms = new ArrayList<String>();
	}
}