OBO=http://purl.obolibrary.org/obo

SRC = trait_xp
EXT = $(OBO)/pato.owl $(OBO)/po.owl $(OBO)/chebi.owl

#FMA-mireot.obo: human-phenotype-ontology_xp_FMA.obo
#	blip -i $< -r human_phenotype -r fma_simple ontol-query -table_pred ontol_db:subclassT/2 -query "differentium(X,_,Y),id_idspace(X,'HP'),\+id_idspace(Y,'HP'),subclassRT(Y,ID),class(ID)" -to obo > $@.tmp && cat $@.tmp > $@

build: trait_xp-combined.obo
	ontology-release-runner  --allow-overwrite --outdir main  --no-subsets --reasoner elk --add-support-from-imports --simple --asserted $<

justify: trait_xp-combined.obo
	ontology-release-runner --ignoreLock  --allow-overwrite --outdir main-justify  --no-subsets --reasoner elk --add-support-from-imports --justify-from TO:0000387 --asserted $<

trait_xp-combined.obo: trait_xp.obo trait.obo plant-chemical-role.obo
	owltools $< trait.obo plant-chemical-role.obo  --merge-support-ontologies --set-ontology-id $(OBO)/to.owl -o -f obo $@

trait_xp-obol.obo:
	obol  qobol -ontology TO -tag trait -undefined_only true -export obo > $@