SRC = plant_trait_xp

#FMA-mireot.obo: human-phenotype-ontology_xp_FMA.obo
#	blip -i $< -r human_phenotype -r fma_simple ontol-query -table_pred ontol_db:subclassT/2 -query "differentium(X,_,Y),id_idspace(X,'HP'),\+id_idspace(Y,'HP'),subclassRT(Y,ID),class(ID)" -to obo > $@.tmp && cat $@.tmp > $@

plant_trait_xp-mireot.obo: $(SRC).obo
	blip -i $< -r plant_trait -r plant_anatomy -r plant_environment -r go -r chebi -r pato ontol-query -mireot TO -to obo > $@.tmp && egrep -v "^(disj|domain|range)" $@.tmp > $@
.PRECIOUS: plant_trait_xp-mireot.obo

%_xp-merged.obo: %_xp-mireot.obo
	obo2obo -o $@ $< $*_xp.obo $*.obo

%-newlinks.txt: %.obo
	blip-reasoner -i $< -import_all -explain genus_differentia -explain equiv_class > $@