<?php

# This file was automatically generated by the MediaWiki installer.
# If you make manual changes, please keep track in case you need to
# recreate them later.
#
# See includes/DefaultSettings.php for all configurable settings
# and their default values, but don't forget to make changes in _this_
# file, not there.
#
# Further documentation for configuration settings may be found at:
# http://www.mediawiki.org/wiki/Manual:Configuration_settings

# If you customize your file layout, set $IP to the directory that contains
# the other MediaWiki files. It will be used as a base to locate files.
if( defined( 'MW_INSTALL_PATH' ) ) {
	$IP = MW_INSTALL_PATH;
} else {
	$IP = dirname( __FILE__ );
}

$path = array( $IP, "$IP/includes", "$IP/languages" );
set_include_path( implode( PATH_SEPARATOR, $path ) . PATH_SEPARATOR . get_include_path() );

require_once( "$IP/includes/DefaultSettings.php" );

if ( $wgCommandLineMode ) {
	if ( isset( $_SERVER ) && array_key_exists( 'REQUEST_METHOD', $_SERVER ) ) {
		die( "This script must be run from the command line\n" );
	}
}
## Uncomment this to disable output compression
# $wgDisableOutputCompression = true;

$wgSitename         = "Planteome Annotation Wiki - Test";

## The URL base path to the directory containing the wiki;
## defaults for all runtime URL paths are based off of this.
## For more information on customizing the URLs please see:
## http://www.mediawiki.org/wiki/Manual:Short_URL
$wgScriptPath       = "/paw";
$wgScriptExtension  = ".php";

## The relative URL path to the skins directory
$wgStylePath        = "$wgScriptPath/skins";

## The relative URL path to the logo.  Make sure you change this from the default,
## or else you'll overwrite your logo when you upgrade!
$wgLogo             = "$wgStylePath/common/images/wiki_logo_with_text.png";

## UPO means: this is also a user preference option

$wgEnableEmail      = true;
$wgEnableUserEmail  = true; # UPO

$wgEmergencyContact = "preecej@science.oregonstate.edu";
$wgPasswordSender = "preecej@science.oregonstate.edu";

$wgEnotifUserTalk = true; # UPO
$wgEnotifWatchlist = true; # UPO
$wgEmailAuthentication = true;

## Database settings
$wgDBtype           = "mysql";
$wgDBserver         = $_SERVER['test_wgDBServer'];
$wgDBname           = $_SERVER['test_wgDBName'];;
$wgDBuser           = $_SERVER['test_wgDBUser'];
$wgDBpassword       = $_SERVER['test_wgDBPassword'];
$JobRunRate         = 1;

# MySQL specific settings
$wgDBprefix         = "";

# MySQL table options to use during installation or update
$wgDBTableOptions   = "ENGINE=InnoDB, DEFAULT CHARSET=binary";

# Experimental charset support for MySQL 4.1/5.0.
$wgDBmysql5 = true;

## Shared memory settings
$wgMainCacheType = CACHE_NONE;
$wgMemCachedServers = array();

## To enable image uploads, make sure the 'images' directory
## is writable, then set this to true:
$wgEnableUploads       = false;
$wgUseImageMagick = true;
$wgImageMagickConvertCommand = "/usr/bin/convert";

## If you use ImageMagick (or any other shell command) on a
## Linux server, this will need to be set to the name of an
## available UTF-8 locale
$wgShellLocale = "en_US.utf8";

## If you want to use image uploads under safe mode,
## create the directories images/archive, images/thumb and
## images/temp, and make them all writable. Then uncomment
## this, if it's not already uncommented:
# $wgHashedUploadDirectory = false;

## If you have the appropriate support software installed
## you can enable inline LaTeX equations:
$wgUseTeX           = false;

## Set $wgCacheDirectory to a writable directory on the web server
## to make your wiki go slightly faster. The directory should not
## be publically accessible from the web.
#$wgCacheDirectory = "$IP/cache";

$wgLocalInterwiki   = strtolower( $wgSitename );

$wgLanguageCode = "en";

$wgSecretKey = "9fbf4140fef09d215376947e74fef8cd873b79b5f97cdf4baf6cf5226db8b706";

## Default skin: you can change the default skin. Use the internal symbolic
## names, ie 'vector', 'monobook':
$wgDefaultSkin = 'planteome';

## For attaching licensing metadata to pages, and displaying an
## appropriate copyright notice / icon. GNU Free Documentation
## License and Creative Commons licenses are supported so far.
$wgEnableCreativeCommonsRdf = true;
$wgRightsPage = ""; # Set to the title of a wiki page that describes your license/copyright
$wgRightsUrl = "http://creativecommons.org/licenses/by-nc-sa/3.0/";
$wgRightsText = "Attribution-NonCommercial-ShareAlike 3.0 Unported";
$wgRightsIcon = "http://i.creativecommons.org/l/by-nc-sa/3.0/88x31.png";
# $wgRightsCode = "[license_code]"; # Not yet used

$wgDiff3 = "/usr/bin/diff3";

# BEGIN: Justin Preece - Config changes and Semantic Bundle (SMW and other extensions)
# (moved from top of file to address premature reference to $wgScriptPath)

#$wgHiddenPrefs[] = 'skin';
#$wgUseAjax = true;

#include_once("$IP/extensions/DataTransfer_PS/DataTransfer.php");

require_once( "$IP/extensions/semantic-bundle/SemanticBundleSettings.php" );
require_once( "$IP/extensions/semantic-bundle/SemanticBundle.php" );

#include("$IP/extensions/SimpleForms/SimpleForms.php");

# PO web service calls
$sfgAutocompletionURLs['remote_PO_terms'] = 'http://palea.cgrb.oregonstate.edu/paw/services/TermSearch_JSON.php?user=paw&type=autocomplete&field=name&ontology=po&qval=<substr>&format=json&max=20';
$sfgAutocompletionURLs['remote_PO_ids'] = 'http://palea.cgrb.oregonstate.edu/paw/services/TermSearch_JSON.php?user=paw&type=autocomplete&field=acc&ontology=po&qval=<substr>&format=json&max=20';

# GO web service calls
$sfgAutocompletionURLs['remote_GO_terms'] = 'http://palea.cgrb.oregonstate.edu/paw/services/TermSearch_JSON.php?user=paw&type=autocomplete&field=name&ontology=go&qval=<substr>&format=json&max=25';
$sfgAutocompletionURLs['remote_GO_ids'] = 'http://palea.cgrb.oregonstate.edu/paw/services/TermSearch_JSON.php?user=paw&type=autocomplete&field=acc&ontology=go&qval=<substr>&format=json&max=25';

$sfgAutocompleteOnAllChars = false;

# END: Justin Preece - Semantic Bundle (SMW and other extensions)

/** Allow client-side caching of pages */
$wgCachePages       = false;

/**
        *  * Set this to current time to invalidate all prior cached pages. Affects both
        *   * client- and server-side caching.
        *    * You can get the current date on your server by using the command:
        *     *   date +%Y%m%d%H%M%S
        *      */
$wgCacheEpoch = 'date +%Y%m%d%H%M%S';

# When you make changes to this configuration file, this will make
# sure that cached pages are cleared.
$wgCacheEpoch = max( $wgCacheEpoch, gmdate( 'YmdHis', @filemtime( __FILE__ ) ) );