This is the "Annotation" form.
To create a page with this form, enter the page name below;
if a page with that name already exists, you will be sent to a form to edit that page.
{{#forminput:form=Annotation}}
{{{info|page name=Annotation:}}}
__NOTOC__
{{#ifexist: {{PAGENAME}}
|'''{{#show:{{PAGENAME}}|?has_Gene_Symbol}} (''{{#show:{{PAGENAME}}|?has_Species_Name}}'')'''
|
}}
= Annotation =
{{{for template|Annotation}}}
{| class="formtable"
! Species Name:
| {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]]
[[Is Associated With Field Or Object::Species Name]]
[[Is Associated With Category::Annotations]]
|?is_Provenance
}}
| {{{field|Species Name|autocomplete on property=Has Reference Taxon|restricted}}}
| {{{field|Species Name|autocomplete on property=Has Reference Taxon}}}
}}
|-
! Gene Symbol:
| {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]]
[[Is Associated With Field Or Object::Gene Symbol]]
[[Is Associated With Category::Annotations]]
|?is_Provenance
}}
|{{{field|Gene Symbol|restricted}}}
|{{{field|Gene Symbol}}}
}}
|-
! Gene Name:
| {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]]
[[Is Associated With Field Or Object::Gene Name]]
[[Is Associated With Category::Annotations]]
|?is_Provenance
}}
| {{{field|Gene Name|restricted}}}
| {{{field|Gene Name}}}
}}
|-
! Gene Synonyms:
| {{#ifexist: {{PAGENAME}}
| {{#if: {{#ask:[[Category:Gene_Synonyms]][[Is Associated With Annotation::{{PAGENAME}} ]] }}
| {{#ask:[[Category:Gene_Synonyms]][[Is Associated With Annotation::{{PAGENAME}} ]]
| ?is_Gene_Synonym
| headers=hide
| mainlabel=-
| format=list
}} {{#formlink:form=Gene_Synonyms|link text=Edit|link type=button|target={{PAGENAME}}/Gene_Synonyms }}
| {{#formlink:form=Gene_Synonyms|link text=Add Synonyms|link type=button|query string=Gene_Synonyms[Annotation Page]={{PAGENAME}}&super_page={{PAGENAME}} }}
}}
| To add gene synonyms, first save your basic annotation information on this "Annotation" tab.
}}
|-
! Gene Locus:
| {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]]
[[Is Associated With Field Or Object::Gene Locus]]
[[Is Associated With Category::Annotations]]
|?is_Provenance
}}
| {{{field|Gene Locus|restricted}}}
| {{{field|Gene Locus}}}
}}
|-
! Gene Type:
| {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]]
[[Is Associated With Field Or Object::Gene Type]]
[[Is Associated With Category::Annotations]]
|?is_Provenance
}}
| {{{field|Gene Type|restricted}}}
| {{{field|Gene Type}}}
}}
|-
! EC Number(s):
| {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]]
[[Is Associated With Field Or Object::EC Numbers]]
[[Is Associated With Category::Annotations]]
|?is_Provenance
}}
| {{{field|EC Numbers|restricted|list|delimiter=,}}}
| {{{field|EC Numbers|list|delimiter=,}}}
}}
|-
! Chromosome:
| {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]]
[[Is Associated With Field Or Object::Chromosome]]
[[Is Associated With Category::Annotations]]
|?is_Provenance
}}
|{{{field|Chromosome|restricted}}}
|{{{field|Chromosome}}}
}}
|-
! Has Phenotype:
| {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]]
[[Is Associated With Field Or Object::Has Phenotype]]
[[Is Associated With Category::Annotations]]
|?is_Provenance
}}
| {{{field|Has Phenotype|restricted}}}
| {{{field|Has Phenotype}}}
}}
|-
! Description:
| {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]]
[[Is Associated With Field Or Object::Annotation Description]]
[[Is Associated With Category::Annotations]]
|?is_Provenance
}}
| {{{field|Annotation Description|restricted}}}
| {{{field|Annotation Description}}}
}}
|}
{{{end template}}}
= External References =
{{#ifexist: {{PAGENAME}}
| {{#if: {{#ask:[[Category:External_References]][[Is Associated With Annotation::{{PAGENAME}} ]] }}
| Add, edit, or remove external reference data {{#formlink:form=External_References|link text=here|target={{PAGENAME}}/External_References }}.
{{#ask:[[Is External Reference::~{{PAGENAME}}/External_References* ]]
| mainlabel=-
|? from_External_Source
|? has_External_Accession_ID
}}
| Add external references for this annotation.
{{#formlink:form=External_References|link text=Add|link type=button|query string=External_References[Annotation Page]={{PAGENAME}}&super_page={{PAGENAME}} }}
}}
| To add external references, first save your basic annotation information on the "Annotation" tab.
}}
= Ontologies =
{{#ifexist: {{PAGENAME}}
| {{#if: {{#ask:[[Category:Ontological_References]][[Is Associated With Annotation::{{PAGENAME}} ]] }}
| Add, edit, or remove ontology references {{#formlink:form=Ontological_References|link text=here|target={{PAGENAME}}/Ontologies }}.
{{#ask:[[Is Ontological Reference::~{{PAGENAME}}/Ontologies*]]
| mainlabel=-
|? from_Ontology
|? has_Term_ID
|? has_Term_Name
|? has_Aspect
|? has_Evidence_Code
|? has_Evidence
|? is_Assigned_By
}}
| Add ontological associations for this annotation.
{{#formlink:form=Ontological_References|link text=Add|link type=button|query string=Ontological_References[Annotation Page]={{PAGENAME}}&super_page={{PAGENAME}} }}
}}
| To add ontological references, first save your basic annotation information on the "Annotation" tab.
}}
= Sequences =
{{#ifexist: {{PAGENAME}}
| {{#if: {{#ask:[[Category:Sequences]][[Is Associated With Annotation::{{PAGENAME}} ]] }}
| Add, edit, or remove sequence references {{#formlink:form=Sequences|link text=here|target={{PAGENAME}}/Sequences }}.
{{#ask:[[Is Sequence Reference::~{{PAGENAME}}/Sequences*]]
| mainlabel=-
|? has_Sequence_Type
|? has_Sequence_Source
|? has_External_Accession_ID
}}
| Add sequence references for this annotation.
{{#formlink:form=Sequences|link text=Add|link type=button|query string=Sequences[Annotation Page]={{PAGENAME}}&super_page={{PAGENAME}} }}
}}
| To add sequence references, first save your basic annotation information on the "Annotation" tab.
}}
= Literature =
{{#ifexist: {{PAGENAME}}
| Add a reference to a publication listed with PubMed or the DOI registry {{#formlink:form=Reference_Publication|link text=here|link type=|query string=Reference_Publication[New Annotation Reference]={{PAGENAME}} }}.
Need to add a reference to a publication without a PubMed ID or DOI (Digital Object Identifier)?
{{#formlink:form=Publication|link text=Add a new publication reference|link type=|query string=Publication[New Annotation Reference]={{PAGENAME}} }}
{{#if: {{#ask:[[Category:Publications]][[Is Associated With Annotations::{{PAGENAME}} ]] OR [[Category:Reference Publications]][[Is Associated With Annotations::{{PAGENAME}} ]] }}
| {{#ask:[[Category:Publications]][[Is Associated With Annotations::{{PAGENAME}} ]] OR [[Category:Reference Publications]][[Is Associated With Annotations::{{PAGENAME}} ]]
|? has First Author
|? has Publication Title
|? has Journal Name
|? has Publication ID
}}
|
}}
| To add publication references, first save your basic annotation information on the "Annotation" tab.
}}
{{{standard input|summary}}}
{{{standard input|watch}}}
{{{standard input|save}}} {{{standard input|changes}}} {{{standard input|cancel}}}