This is the "Annotation" form. To create a page with this form, enter the page name below; if a page with that name already exists, you will be sent to a form to edit that page. {{#forminput:form=Annotation}} {{{info|page name=Annotation:}}} __NOTOC__ {{#ifexist: {{PAGENAME}} |'''{{#show:{{PAGENAME}}|?has_Gene_Symbol}} (''{{#show:{{PAGENAME}}|?has_Species_Name}}'')''' | }} = Annotation = {{{for template|Annotation}}} {| class="formtable" ! Species Name: | {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]] [[Is Associated With Field Or Object::Species Name]] [[Is Associated With Category::Annotations]] |?is_Provenance }} | {{{field|Species Name|autocomplete on property=Has Reference Taxon|restricted}}} | {{{field|Species Name|autocomplete on property=Has Reference Taxon}}} }} |- ! Gene Symbol: | {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]] [[Is Associated With Field Or Object::Gene Symbol]] [[Is Associated With Category::Annotations]] |?is_Provenance }} |{{{field|Gene Symbol|restricted}}} |{{{field|Gene Symbol}}} }} |- ! Gene Name: | {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]] [[Is Associated With Field Or Object::Gene Name]] [[Is Associated With Category::Annotations]] |?is_Provenance }} | {{{field|Gene Name|restricted}}} | {{{field|Gene Name}}} }} |- ! Gene Synonyms: | {{#ifexist: {{PAGENAME}} | {{#if: {{#ask:[[Category:Gene_Synonyms]][[Is Associated With Annotation::{{PAGENAME}} ]] }} | {{#ask:[[Category:Gene_Synonyms]][[Is Associated With Annotation::{{PAGENAME}} ]] | ?is_Gene_Synonym | headers=hide | mainlabel=- | format=list }} {{#formlink:form=Gene_Synonyms|link text=Edit|link type=button|target={{PAGENAME}}/Gene_Synonyms }} | {{#formlink:form=Gene_Synonyms|link text=Add Synonyms|link type=button|query string=Gene_Synonyms[Annotation Page]={{PAGENAME}}&super_page={{PAGENAME}} }} }} | To add gene synonyms, first save your basic annotation information on this "Annotation" tab. }} |- ! Gene Locus: | {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]] [[Is Associated With Field Or Object::Gene Locus]] [[Is Associated With Category::Annotations]] |?is_Provenance }} | {{{field|Gene Locus|restricted}}} | {{{field|Gene Locus}}} }} |- ! Gene Type: | {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]] [[Is Associated With Field Or Object::Gene Type]] [[Is Associated With Category::Annotations]] |?is_Provenance }} | {{{field|Gene Type|restricted}}} | {{{field|Gene Type}}} }} |- ! EC Number(s): | {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]] [[Is Associated With Field Or Object::EC Numbers]] [[Is Associated With Category::Annotations]] |?is_Provenance }} | {{{field|EC Numbers|restricted|list|delimiter=,}}} | {{{field|EC Numbers|list|delimiter=,}}} }} |- ! Chromosome: | {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]] [[Is Associated With Field Or Object::Chromosome]] [[Is Associated With Category::Annotations]] |?is_Provenance }} |{{{field|Chromosome|restricted}}} |{{{field|Chromosome}}} }} |- ! Has Phenotype: | {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]] [[Is Associated With Field Or Object::Has Phenotype]] [[Is Associated With Category::Annotations]] |?is_Provenance }} | {{{field|Has Phenotype|restricted}}} | {{{field|Has Phenotype}}} }} |- ! Description: | {{#if: {{#ask: [[Is Provenance::~{{PAGENAME}}/Provenance*]] [[Is Associated With Field Or Object::Annotation Description]] [[Is Associated With Category::Annotations]] |?is_Provenance }} | {{{field|Annotation Description|restricted}}} | {{{field|Annotation Description}}} }} |} {{{end template}}} = External References = {{#ifexist: {{PAGENAME}} | {{#if: {{#ask:[[Category:External_References]][[Is Associated With Annotation::{{PAGENAME}} ]] }} | Add, edit, or remove external reference data {{#formlink:form=External_References|link text=here|target={{PAGENAME}}/External_References }}. {{#ask:[[Is External Reference::~{{PAGENAME}}/External_References* ]] | mainlabel=- |? from_External_Source |? has_External_Accession_ID }} | Add external references for this annotation.
{{#formlink:form=External_References|link text=Add|link type=button|query string=External_References[Annotation Page]={{PAGENAME}}&super_page={{PAGENAME}} }} }} | To add external references, first save your basic annotation information on the "Annotation" tab. }} = Ontologies = {{#ifexist: {{PAGENAME}} | {{#if: {{#ask:[[Category:Ontological_References]][[Is Associated With Annotation::{{PAGENAME}} ]] }} | Add, edit, or remove ontology references {{#formlink:form=Ontological_References|link text=here|target={{PAGENAME}}/Ontologies }}. {{#ask:[[Is Ontological Reference::~{{PAGENAME}}/Ontologies*]] | mainlabel=- |? from_Ontology |? has_Term_ID |? has_Term_Name |? has_Aspect |? has_Evidence_Code |? has_Evidence |? is_Assigned_By }} | Add ontological associations for this annotation.
{{#formlink:form=Ontological_References|link text=Add|link type=button|query string=Ontological_References[Annotation Page]={{PAGENAME}}&super_page={{PAGENAME}} }} }} | To add ontological references, first save your basic annotation information on the "Annotation" tab. }} = Sequences = {{#ifexist: {{PAGENAME}} | {{#if: {{#ask:[[Category:Sequences]][[Is Associated With Annotation::{{PAGENAME}} ]] }} | Add, edit, or remove sequence references {{#formlink:form=Sequences|link text=here|target={{PAGENAME}}/Sequences }}. {{#ask:[[Is Sequence Reference::~{{PAGENAME}}/Sequences*]] | mainlabel=- |? has_Sequence_Type |? has_Sequence_Source |? has_External_Accession_ID }} | Add sequence references for this annotation.
{{#formlink:form=Sequences|link text=Add|link type=button|query string=Sequences[Annotation Page]={{PAGENAME}}&super_page={{PAGENAME}} }} }} | To add sequence references, first save your basic annotation information on the "Annotation" tab. }} = Literature = {{#ifexist: {{PAGENAME}} | Add a reference to a publication listed with PubMed or the DOI registry {{#formlink:form=Reference_Publication|link text=here|link type=|query string=Reference_Publication[New Annotation Reference]={{PAGENAME}} }}.
Need to add a reference to a publication without a PubMed ID or DOI (Digital Object Identifier)?
{{#formlink:form=Publication|link text=Add a new publication reference|link type=|query string=Publication[New Annotation Reference]={{PAGENAME}} }} {{#if: {{#ask:[[Category:Publications]][[Is Associated With Annotations::{{PAGENAME}} ]] OR [[Category:Reference Publications]][[Is Associated With Annotations::{{PAGENAME}} ]] }} | {{#ask:[[Category:Publications]][[Is Associated With Annotations::{{PAGENAME}} ]] OR [[Category:Reference Publications]][[Is Associated With Annotations::{{PAGENAME}} ]] |? has First Author |? has Publication Title |? has Journal Name |? has Publication ID }} | }} | To add publication references, first save your basic annotation information on the "Annotation" tab. }} {{{standard input|summary}}} {{{standard input|watch}}} {{{standard input|save}}} {{{standard input|changes}}} {{{standard input|cancel}}}